]> git.lyx.org Git - lyx.git/blobdiff - src/Buffer.cpp
Cmake build: Don't use temporary doc-files as source for installation
[lyx.git] / src / Buffer.cpp
index 115a542544e8353550c78f4f428d5b58c4058955..c4ce8ea053d45633e4ace7f8f3c4463e26047b14 100644 (file)
 #include "ParagraphParameters.h"
 #include "ParIterator.h"
 #include "PDFOptions.h"
+#include "Session.h"
 #include "SpellChecker.h"
 #include "sgml.h"
+#include "texstream.h"
 #include "TexRow.h"
 #include "Text.h"
 #include "TextClass.h"
 
 #include "mathed/InsetMathHull.h"
 #include "mathed/MacroTable.h"
-#include "mathed/MathMacroTemplate.h"
+#include "mathed/InsetMathMacroTemplate.h"
 #include "mathed/MathSupport.h"
 
+#include "graphics/GraphicsCache.h"
 #include "graphics/PreviewLoader.h"
 
 #include "frontends/alert.h"
@@ -89,6 +92,7 @@
 #include "support/debug.h"
 #include "support/docstring_list.h"
 #include "support/ExceptionMessage.h"
+#include "support/FileMonitor.h"
 #include "support/FileName.h"
 #include "support/FileNameList.h"
 #include "support/filetools.h"
 #include "support/types.h"
 
 #include "support/bind.h"
-#include "support/shared_ptr.h"
 
 #include <algorithm>
 #include <fstream>
 #include <iomanip>
 #include <map>
+#include <memory>
 #include <set>
 #include <sstream>
 #include <vector>
@@ -133,7 +137,7 @@ int const LYX_FORMAT = LYX_FORMAT_LYX;
 typedef map<string, bool> DepClean;
 typedef map<docstring, pair<InsetLabel const *, Buffer::References> > RefCache;
 
-} // namespace anon
+} // namespace
 
 
 // A storehouse for the cloned buffers.
@@ -236,8 +240,8 @@ public:
        /// positions of child buffers in the buffer
        typedef map<Buffer const * const, DocIterator> BufferPositionMap;
        struct ScopeBuffer {
-               ScopeBuffer() {}
-               ScopeBuffer(DocIterator const & s,Buffer const * b)
+               ScopeBuffer() : buffer(0) {}
+               ScopeBuffer(DocIterator const & s, Buffer const * b)
                        : scope(s), buffer(b) {}
                DocIterator scope;
                Buffer const * buffer;
@@ -261,9 +265,8 @@ public:
        /// Container for all sort of Buffer dependant errors.
        map<string, ErrorList> errorLists;
 
-       /// timestamp and checksum used to test if the file has been externally
-       /// modified. (Used to properly enable 'File->Revert to saved', bug 4114).
-       time_t timestamp_;
+       /// checksum used to test if the file has been externally modified.  Used to
+       /// double check whether the file had been externally modified when saving.
        unsigned long checksum_;
 
        ///
@@ -276,7 +279,7 @@ public:
 
        /// A cache for the bibfiles (including bibfiles of loaded child
        /// documents), needed for appropriate update of natbib labels.
-       mutable support::FileNameList bibfiles_cache_;
+       mutable support::FileNamePairList bibfiles_cache_;
 
        // FIXME The caching mechanism could be improved. At present, we have a
        // cache for each Buffer, that caches all the bibliography info for that
@@ -370,6 +373,19 @@ public:
                + (with_blanks ? blank_count_ : 0);
        }
 
+       // does the buffer contain tracked changes? (if so, we automatically
+       // display the review toolbar, for instance)
+       mutable bool tracked_changes_present_;
+
+       // Make sure the file monitor monitors the good file.
+       void refreshFileMonitor();
+
+       /// Notify or clear of external modification
+       void fileExternallyModified(bool exists);
+
+       /// has been externally modified? Can be reset by the user.
+       mutable bool externally_modified_;
+
 private:
        /// So we can force access via the accessors.
        mutable Buffer const * parent_buffer;
@@ -378,6 +394,7 @@ private:
        int char_count_;
        int blank_count_;
 
+       FileMonitorPtr file_monitor_;
 };
 
 
@@ -413,13 +430,15 @@ Buffer::Impl::Impl(Buffer * owner, FileName const & file, bool readonly_,
        : owner_(owner), lyx_clean(true), bak_clean(true), unnamed(false),
          internal_buffer(false), read_only(readonly_), filename(file),
          file_fully_loaded(false), file_format(LYX_FORMAT), need_format_backup(false),
-         ignore_parent(false),  toc_backend(owner), macro_lock(false), timestamp_(0),
+         ignore_parent(false),  toc_backend(owner), macro_lock(false),
          checksum_(0), wa_(0),  gui_(0), undo_(*owner), bibinfo_cache_valid_(false),
-         bibfile_cache_valid_(false), cite_labels_valid_(false), inset(0),
-         preview_loader_(0), cloned_buffer_(cloned_buffer), clone_list_(0),
-         doing_export(false), parent_buffer(0),
+         bibfile_cache_valid_(false), cite_labels_valid_(false), preview_error_(false),
+         inset(0), preview_loader_(0), cloned_buffer_(cloned_buffer),
+         clone_list_(0), doing_export(false),
+         tracked_changes_present_(0), externally_modified_(false), parent_buffer(0),
          word_count_(0), char_count_(0), blank_count_(0)
 {
+       refreshFileMonitor();
        if (!cloned_buffer_) {
                temppath = createBufferTmpDir();
                lyxvc.setBuffer(owner_);
@@ -442,6 +461,7 @@ Buffer::Impl::Impl(Buffer * owner, FileName const & file, bool readonly_,
        preview_file_ = cloned_buffer_->d->preview_file_;
        preview_format_ = cloned_buffer_->d->preview_format_;
        preview_error_ = cloned_buffer_->d->preview_error_;
+       tracked_changes_present_ = cloned_buffer_->d->tracked_changes_present_;
 }
 
 
@@ -517,17 +537,21 @@ Buffer::~Buffer()
                Impl::BufferPositionMap::iterator end = d->children_positions.end();
                for (; it != end; ++it) {
                        Buffer * child = const_cast<Buffer *>(it->first);
-                       if (theBufferList().isLoaded(child)) { 
-                        if (theBufferList().isOthersChild(this, child))
-                                child->setParent(0);
-                        else
-                               theBufferList().release(child);
+                       if (theBufferList().isLoaded(child)) {
+                               if (theBufferList().isOthersChild(this, child))
+                                       child->setParent(0);
+                               else
+                                       theBufferList().release(child);
                        }
                }
 
                if (!isClean()) {
                        docstring msg = _("LyX attempted to close a document that had unsaved changes!\n");
-                       msg += emergencyWrite();
+                       try {
+                               msg += emergencyWrite();
+                       } catch (...) {
+                               msg += "  " + _("Save failed! Document is lost.");
+                       }
                        Alert::warning(_("Attempting to close changed document!"), msg);
                }
 
@@ -699,7 +723,7 @@ BufferParams const & Buffer::masterParams() const
 double Buffer::fontScalingFactor() const
 {
        return isExporting() ? 75.0 * params().html_math_img_scale
-               : 0.01 * lyxrc.dpi * lyxrc.zoom * lyxrc.preview_scale_factor * params().display_pixel_ratio;
+               : 0.01 * lyxrc.dpi * lyxrc.currentZoom * lyxrc.preview_scale_factor * params().display_pixel_ratio;
 }
 
 
@@ -808,7 +832,7 @@ string Buffer::logName(LogType * type) const
        FileName const bname(
                addName(path, onlyFileName(
                        changeExtension(filename,
-                                       formats.extension(params().bufferFormat()) + ".out"))));
+                                       theFormats().extension(params().bufferFormat()) + ".out"))));
 
        // Also consider the master buffer log file
        FileName masterfname = fname;
@@ -856,6 +880,7 @@ void Buffer::setFileName(FileName const & fname)
 {
        bool const changed = fname != d->filename;
        d->filename = fname;
+       d->refreshFileMonitor();
        if (changed)
                lyxvc().file_found_hook(fname);
        setReadonly(d->filename.isReadOnly());
@@ -903,8 +928,12 @@ int Buffer::readHeader(Lexer & lex)
        params().html_latex_end.clear();
        params().html_math_img_scale = 1.0;
        params().output_sync_macro.erase();
-       params().setLocalLayout(string(), false);
-       params().setLocalLayout(string(), true);
+       params().setLocalLayout(docstring(), false);
+       params().setLocalLayout(docstring(), true);
+       params().biblio_opts.erase();
+       params().biblatex_bibstyle.erase();
+       params().biblatex_citestyle.erase();
+       params().multibib.erase();
 
        for (int i = 0; i < 4; ++i) {
                params().user_defined_bullet(i) = ITEMIZE_DEFAULTS[i];
@@ -943,17 +972,17 @@ int Buffer::readHeader(Lexer & lex)
                                                                        "%1$s %2$s\n"),
                                                         from_utf8(token),
                                                         lex.getDocString());
-                               errorList.push_back(ErrorItem(_("Document header error"),
-                                       s, -1, 0, 0));
+                               errorList.push_back(ErrorItem(_("Document header error"), s));
                        }
                }
        }
        if (begin_header_line) {
                docstring const s = _("\\begin_header is missing");
-               errorList.push_back(ErrorItem(_("Document header error"),
-                       s, -1, 0, 0));
+               errorList.push_back(ErrorItem(_("Document header error"), s));
        }
 
+       params().shell_escape = theSession().shellescapeFiles().find(absFileName());
+
        params().makeDocumentClass();
 
        return unknown_tokens;
@@ -973,8 +1002,7 @@ bool Buffer::readDocument(Lexer & lex)
 
        if (!lex.checkFor("\\begin_document")) {
                docstring const s = _("\\begin_document is missing");
-               errorList.push_back(ErrorItem(_("Document header error"),
-                       s, -1, 0, 0));
+               errorList.push_back(ErrorItem(_("Document header error"), s));
        }
 
        readHeader(lex);
@@ -1033,7 +1061,10 @@ bool Buffer::readDocument(Lexer & lex)
        params().indiceslist().addDefault(B_("Index"));
 
        // read main text
-       d->old_position = originFilePath();
+       if (FileName::isAbsolute(params().origin))
+               d->old_position = params().origin;
+       else
+               d->old_position = filePath();
        bool const res = text().read(lex, errorList, d->inset);
        d->old_position.clear();
 
@@ -1054,7 +1085,7 @@ bool Buffer::readDocument(Lexer & lex)
 
 bool Buffer::importString(string const & format, docstring const & contents, ErrorList & errorList)
 {
-       Format const * fmt = formats.getFormat(format);
+       Format const * fmt = theFormats().getFormat(format);
        if (!fmt)
                return false;
        // It is important to use the correct extension here, since some
@@ -1168,7 +1199,7 @@ Buffer::ReadStatus Buffer::readFile(FileName const & fn)
 
        d->file_fully_loaded = true;
        d->read_only = !d->filename.isWritable();
-       params().compressed = formats.isZippedFile(d->filename);
+       params().compressed = theFormats().isZippedFile(d->filename);
        saveCheckSum();
        return ReadSuccess;
 }
@@ -1282,7 +1313,7 @@ Buffer::ReadStatus Buffer::convertLyXFormat(FileName const & fn,
        command << os::python()
                << ' ' << quoteName(lyx2lyx.toFilesystemEncoding())
                << " -t " << convert<string>(LYX_FORMAT)
-               << " -o " << quoteName(tmpfile.toFilesystemEncoding())
+               << " -o " << quoteName(tmpfile.toSafeFilesystemEncoding())
                << ' ' << quoteName(fn.toSafeFilesystemEncoding());
        string const command_str = command.str();
 
@@ -1313,12 +1344,12 @@ Buffer::ReadStatus Buffer::convertLyXFormat(FileName const & fn,
 FileName Buffer::getBackupName() const {
        FileName const & fn = fileName();
        string const fname = fn.onlyFileNameWithoutExt();
-       string const fext  = fn.extension();
+       string const fext  = fn.extension() + "~";
        string const fpath = lyxrc.backupdir_path.empty() ?
                fn.onlyPath().absFileName() :
                lyxrc.backupdir_path;
        string const fform = convert<string>(d->file_format);
-       string const backname = fname + "-" + fform;
+       string const backname = fname + "-lyxformat-" + fform;
        FileName backup(addName(fpath, addExtension(backname, fext)));
 
        // limit recursion, just in case
@@ -1363,7 +1394,7 @@ bool Buffer::save() const
        }
 
        // ask if the disk file has been externally modified (use checksum method)
-       if (fileName().exists() && isExternallyModified(checksum_method)) {
+       if (fileName().exists() && isChecksumModified()) {
                docstring text =
                        bformat(_("Document %1$s has been externally modified. "
                                "Are you sure you want to overwrite this file?"), file);
@@ -1378,20 +1409,19 @@ bool Buffer::save() const
 
        // if the file does not yet exist, none of the backup activity
        // that follows is necessary
-  if (!fileName().exists()) {
+       if (!fileName().exists()) {
                if (!writeFile(fileName()))
-      return false;
-    markClean();
-    return true;
-  }
+                       return false;
+               markClean();
+               return true;
+       }
 
        // we first write the file to a new name, then move it to its
        // proper location once that has been done successfully. that
        // way we preserve the original file if something goes wrong.
        string const justname = fileName().onlyFileNameWithoutExt();
-       boost::scoped_ptr<TempFile>
-               tempfile(new TempFile(fileName().onlyPath(),
-                  justname + "-XXXXXX.lyx"));
+       auto tempfile = make_unique<TempFile>(fileName().onlyPath(),
+                                             justname + "-XXXXXX.lyx");
        bool const symlink = fileName().isSymLink();
        if (!symlink)
                tempfile->setAutoRemove(false);
@@ -1575,7 +1605,7 @@ docstring Buffer::emergencyWrite()
                return user_message;
        }
 
-       user_message += "  " + _("Save failed! Bummer. Document is lost.");
+       user_message += "  " + _("Save failed! Document is lost.");
        // Don't try again.
        markClean();
        return user_message;
@@ -1652,9 +1682,11 @@ bool Buffer::makeLaTeXFile(FileName const & fname,
 {
        OutputParams runparams = runparams_in;
 
-       // XeTeX with TeX fonts is only safe with ASCII encoding,
-       // but the "flavor" is not known in BufferParams::encoding().
-       if (!params().useNonTeXFonts && (runparams.flavor == OutputParams::XETEX))
+       // XeTeX with TeX fonts is only safe with ASCII encoding (see also #9740),
+       // Check here, because the "flavor" is not known in BufferParams::encoding()
+       // (power users can override this safety measure selecting "utf8-plain").
+       if (!params().useNonTeXFonts && (runparams.flavor == OutputParams::XETEX)
+           && (runparams.encoding->name() != "utf8-plain"))
                runparams.encoding = encodings.fromLyXName("ascii");
 
        string const encoding = runparams.encoding->iconvName();
@@ -1675,7 +1707,7 @@ bool Buffer::makeLaTeXFile(FileName const & fname,
        ErrorList & errorList = d->errorLists["Export"];
        errorList.clear();
        bool failed_export = false;
-       otexstream os(ofs, d->texrow);
+       otexstream os(ofs);
 
        // make sure we are ready to export
        // this needs to be done before we validate
@@ -1685,7 +1717,6 @@ bool Buffer::makeLaTeXFile(FileName const & fname,
        updateMacroInstances(OutputUpdate);
 
        try {
-               os.texrow().reset();
                writeLaTeXSource(os, original_path, runparams, output);
        }
        catch (EncodingException const & e) {
@@ -1698,17 +1729,18 @@ bool Buffer::makeLaTeXFile(FileName const & fname,
                errorList.push_back(ErrorItem(msg, _("Some characters of your document are probably not "
                                "representable in the chosen encoding.\n"
                                "Changing the document encoding to utf8 could help."),
-                               e.par_id, e.pos, e.pos + 1));
+                                             {e.par_id, e.pos}, {e.par_id, e.pos + 1}));
                failed_export = true;
        }
        catch (iconv_codecvt_facet_exception const & e) {
                errorList.push_back(ErrorItem(_("iconv conversion failed"),
-                       _(e.what()), -1, 0, 0));
+                                             _(e.what())));
                failed_export = true;
        }
        catch (exception const & e) {
                errorList.push_back(ErrorItem(_("conversion failed"),
-                       _(e.what()), -1, 0, 0));
+                                             _(e.what())));
+               lyxerr << e.what() << endl;
                failed_export = true;
        }
        catch (...) {
@@ -1716,6 +1748,8 @@ bool Buffer::makeLaTeXFile(FileName const & fname,
                lyx_exit(1);
        }
 
+       d->texrow = move(os.texrow());
+
        ofs.close();
        if (ofs.fail()) {
                failed_export = true;
@@ -1740,8 +1774,10 @@ void Buffer::writeLaTeXSource(otexstream & os,
        OutputParams runparams = runparams_in;
 
        // XeTeX with TeX fonts is only safe with ASCII encoding,
-       // but the "flavor" is not known in BufferParams::encoding().
-       if (!params().useNonTeXFonts && (runparams.flavor == OutputParams::XETEX))
+       // Check here, because the "flavor" is not known in BufferParams::encoding()
+       // (power users can override this safety measure selecting "utf8-plain").
+       if (!params().useNonTeXFonts && (runparams.flavor == OutputParams::XETEX)
+           && (runparams.encoding->name() != "utf8-plain"))
                runparams.encoding = encodings.fromLyXName("ascii");
        // FIXME: when only the current paragraph is shown, this is ignored
        //        (or not reached) and characters encodable in the current
@@ -1865,6 +1901,55 @@ void Buffer::writeLaTeXSource(otexstream & os,
                runparams.use_babel = params().writeLaTeX(os, features,
                                                          d->filename.onlyPath());
 
+               // Biblatex bibliographies are loaded here
+               if (params().useBiblatex()) {
+                       vector<docstring> const bibfiles =
+                               prepareBibFilePaths(runparams, getBibfilesCache(), true);
+                       for (docstring const & file: bibfiles)
+                               os << "\\addbibresource{" << file << "}\n";
+               }
+
+               if (!runparams.dryrun && features.hasPolyglossiaExclusiveLanguages()
+                   && !features.hasOnlyPolyglossiaLanguages()) {
+                       docstring blangs;
+                       docstring plangs;
+                       vector<string> bll = features.getBabelExclusiveLanguages();
+                       vector<string> pll = features.getPolyglossiaExclusiveLanguages();
+                       if (!bll.empty()) {
+                               docstring langs;
+                               for (vector<string>::const_iterator it = bll.begin(); it != bll.end(); ++it) {
+                                       if (!langs.empty())
+                                               langs += ", ";
+                                       langs += _(*it);
+                               }
+                               blangs = bll.size() > 1 ?
+                                           support::bformat(_("The languages %1$s are only supported by Babel."), langs)
+                                         : support::bformat(_("The language %1$s is only supported by Babel."), langs);
+                       }
+                       if (!pll.empty()) {
+                               docstring langs;
+                               for (vector<string>::const_iterator it = pll.begin(); it != pll.end(); ++it) {
+                                       if (!langs.empty())
+                                               langs += ", ";
+                                       langs += _(*it);
+                               }
+                               plangs = pll.size() > 1 ?
+                                           support::bformat(_("The languages %1$s are only supported by Polyglossia."), langs)
+                                         : support::bformat(_("The language %1$s is only supported by Polyglossia."), langs);
+                               if (!blangs.empty())
+                                       plangs += "\n";
+                       }
+
+                       frontend::Alert::warning(
+                               _("Incompatible Languages!"),
+                               support::bformat(
+                                 _("You cannot use the following languages "
+                                   "together in one LaTeX document because "
+                                   "they require conflicting language packages:\n"
+                                   "%1$s%2$s"),
+                                 plangs, blangs));
+               }
+
                // Japanese might be required only in some children of a document,
                // but once required, we must keep use_japanese true.
                runparams.use_japanese |= features.isRequired("japanese");
@@ -1877,8 +1962,14 @@ void Buffer::writeLaTeXSource(otexstream & os,
                }
 
                // make the body.
+               // mark the beginning of the body to separate it from InPreamble insets
+               os.texrow().start(TexRow::beginDocument());
                os << "\\begin{document}\n";
 
+               // mark the start of a new paragraph by simulating a newline,
+               // so that os.afterParbreak() returns true at document start
+               os.lastChar('\n');
+
                // output the parent macros
                MacroSet::iterator it = parentMacros.begin();
                MacroSet::iterator end = parentMacros.end();
@@ -1889,8 +1980,6 @@ void Buffer::writeLaTeXSource(otexstream & os,
 
        } // output_preamble
 
-       os.texrow().start(paragraphs().begin()->id(), 0);
-
        LYXERR(Debug::INFO, "preamble finished, now the body.");
 
        // the real stuff
@@ -1911,8 +2000,6 @@ void Buffer::writeLaTeXSource(otexstream & os,
        }
        runparams_in.encoding = runparams.encoding;
 
-       os.texrow().finalize();
-
        LYXERR(Debug::INFO, "Finished making LaTeX file.");
        LYXERR(Debug::INFO, "Row count was " << os.texrow().rows() - 1 << '.');
 }
@@ -1948,7 +2035,7 @@ void Buffer::writeDocBookSource(odocstream & os, string const & fname,
        LaTeXFeatures features(*this, params(), runparams);
        validate(features);
 
-       d->texrow.reset(false);
+       d->texrow.reset();
 
        DocumentClass const & tclass = params().documentClass();
        string const & top_element = tclass.latexname();
@@ -1969,12 +2056,12 @@ void Buffer::writeDocBookSource(odocstream & os, string const & fname,
                if (! tclass.class_header().empty())
                        os << from_ascii(tclass.class_header());
                else if (runparams.flavor == OutputParams::XML)
-                       os << "PUBLIC \"-//OASIS//DTD DocBook XML//EN\" "
+                       os << "PUBLIC \"-//OASIS//DTD DocBook XML V4.2//EN\" "
                            << "\"http://www.oasis-open.org/docbook/xml/4.2/docbookx.dtd\"";
                else
                        os << " PUBLIC \"-//OASIS//DTD DocBook V4.2//EN\"";
 
-               docstring preamble = from_utf8(params().preamble);
+               docstring preamble = params().preamble;
                if (runparams.flavor != OutputParams::XML ) {
                        preamble += "<!ENTITY % output.print.png \"IGNORE\">\n";
                        preamble += "<!ENTITY % output.print.pdf \"IGNORE\">\n";
@@ -2077,14 +2164,14 @@ void Buffer::writeLyXHTMLSource(odocstream & os,
                if (!styles.empty())
                        os << "\n<!-- Text Class Preamble -->\n" << styles << '\n';
 
-               styles = from_utf8(features.getPreambleSnippets());
+               styles = features.getPreambleSnippets().str;
                if (!styles.empty())
                        os << "\n<!-- Preamble Snippets -->\n" << styles << '\n';
 
                // we will collect CSS information in a stream, and then output it
                // either here, as part of the header, or else in a separate file.
                odocstringstream css;
-               styles = from_utf8(features.getCSSSnippets());
+               styles = features.getCSSSnippets();
                if (!styles.empty())
                        css << "/* LyX Provided Styles */\n" << styles << '\n';
 
@@ -2139,7 +2226,7 @@ void Buffer::writeLyXHTMLSource(odocstream & os,
        if (output_body) {
                bool const output_body_tag = (output != IncludedFile);
                if (output_body_tag)
-                       os << "<body>\n";
+                       os << "<body dir=\"auto\">\n";
                XHTMLStream xs(os);
                if (output != IncludedFile)
                        // if we're an included file, the counters are in the master.
@@ -2207,8 +2294,8 @@ void Buffer::validate(LaTeXFeatures & features) const
        if (!features.runparams().is_child)
                params().validate(features);
 
-       for_each(paragraphs().begin(), paragraphs().end(),
-                bind(&Paragraph::validate, _1, ref(features)));
+       for (Paragraph const & p : paragraphs())
+               p.validate(features);
 
        if (lyxerr.debugging(Debug::LATEX)) {
                features.showStruct();
@@ -2226,8 +2313,8 @@ void Buffer::getLabelList(vector<docstring> & list) const
 
        list.clear();
        shared_ptr<Toc> toc = d->toc_backend.toc("label");
-       TocIterator toc_it = toc->begin();
-       TocIterator end = toc->end();
+       Toc::const_iterator toc_it = toc->begin();
+       Toc::const_iterator end = toc->end();
        for (; toc_it != end; ++toc_it) {
                if (toc_it->depth() == 0)
                        list.push_back(toc_it->str());
@@ -2248,7 +2335,7 @@ void Buffer::updateBibfilesCache(UpdateScope scope) const
        for (InsetIterator it = inset_iterator_begin(inset()); it; ++it) {
                if (it->lyxCode() == BIBTEX_CODE) {
                        InsetBibtex const & inset = static_cast<InsetBibtex const &>(*it);
-                       support::FileNameList const bibfiles = inset.getBibFiles();
+                       support::FileNamePairList const bibfiles = inset.getBibFiles();
                        d->bibfiles_cache_.insert(d->bibfiles_cache_.end(),
                                bibfiles.begin(),
                                bibfiles.end());
@@ -2257,7 +2344,7 @@ void Buffer::updateBibfilesCache(UpdateScope scope) const
                        Buffer const * const incbuf = inset.getChildBuffer();
                        if (!incbuf)
                                continue;
-                       support::FileNameList const & bibfiles =
+                       support::FileNamePairList const & bibfiles =
                                        incbuf->getBibfilesCache(UpdateChildOnly);
                        if (!bibfiles.empty()) {
                                d->bibfiles_cache_.insert(d->bibfiles_cache_.end(),
@@ -2295,7 +2382,7 @@ void Buffer::invalidateBibfileCache() const
 }
 
 
-support::FileNameList const & Buffer::getBibfilesCache(UpdateScope scope) const
+support::FileNamePairList const & Buffer::getBibfilesCache(UpdateScope scope) const
 {
        // FIXME This is probably unnecessary, given where we call this.
        // If this is a child document, use the master's cache instead.
@@ -2329,16 +2416,17 @@ void Buffer::checkIfBibInfoCacheIsValid() const
        }
 
        // compare the cached timestamps with the actual ones.
-       FileNameList const & bibfiles_cache = getBibfilesCache();
-       FileNameList::const_iterator ei = bibfiles_cache.begin();
-       FileNameList::const_iterator en = bibfiles_cache.end();
+       FileNamePairList const & bibfiles_cache = getBibfilesCache();
+       FileNamePairList::const_iterator ei = bibfiles_cache.begin();
+       FileNamePairList::const_iterator en = bibfiles_cache.end();
        for (; ei != en; ++ ei) {
-               time_t lastw = ei->lastModified();
-               time_t prevw = d->bibfile_status_[*ei];
+               FileName const fn = ei->second;
+               time_t lastw = fn.lastModified();
+               time_t prevw = d->bibfile_status_[fn];
                if (lastw != prevw) {
                        d->bibinfo_cache_valid_ = false;
                        d->cite_labels_valid_ = false;
-                       d->bibfile_status_[*ei] = lastw;
+                       d->bibfile_status_[fn] = lastw;
                }
        }
 }
@@ -2447,7 +2535,7 @@ bool Buffer::getStatus(FuncRequest const & cmd, FuncStatus & flag)
        switch (cmd.action()) {
 
        case LFUN_BUFFER_TOGGLE_READ_ONLY:
-               flag.setOnOff(isReadonly());
+               flag.setOnOff(hasReadonlyFlag());
                break;
 
                // FIXME: There is need for a command-line import.
@@ -2466,11 +2554,12 @@ bool Buffer::getStatus(FuncRequest const & cmd, FuncStatus & flag)
                        enable = true;
                        break;
                }
-               string format = to_utf8(arg);
+               string format = (arg.empty() || arg == "default") ?
+                       params().getDefaultOutputFormat() : to_utf8(arg);
                size_t pos = format.find(' ');
                if (pos != string::npos)
                        format = format.substr(0, pos);
-               enable = params().isExportable(format);
+               enable = params().isExportable(format, false);
                if (!enable)
                        flag.message(bformat(
                                             _("Don't know how to export to format: %1$s"), arg));
@@ -2482,7 +2571,7 @@ bool Buffer::getStatus(FuncRequest const & cmd, FuncStatus & flag)
                break;
 
        case LFUN_BUILD_PROGRAM:
-               enable = params().isExportable("program");
+               enable = params().isExportable("program", false);
                break;
 
        case LFUN_BRANCH_ACTIVATE:
@@ -2570,15 +2659,17 @@ void Buffer::dispatch(FuncRequest const & func, DispatchResult & dr)
                                dr.setMessage(log);
                }
                else
-                       setReadonly(!isReadonly());
+                       setReadonly(!hasReadonlyFlag());
                break;
 
        case LFUN_BUFFER_EXPORT: {
-               ExportStatus const status = doExport(argument, false);
+               string const format = (argument.empty() || argument == "default") ?
+                       params().getDefaultOutputFormat() : argument;
+               ExportStatus const status = doExport(format, false);
                dr.setError(status != ExportSuccess);
                if (status != ExportSuccess)
                        dr.setMessage(bformat(_("Error exporting to format: %1$s."),
-                                             func.argument()));
+                                             from_utf8(format)));
                break;
        }
 
@@ -2597,7 +2688,7 @@ void Buffer::dispatch(FuncRequest const & func, DispatchResult & dr)
        case LFUN_BUFFER_EXPORT_CUSTOM: {
                string format_name;
                string command = split(argument, format_name, ' ');
-               Format const * format = formats.getFormat(format_name);
+               Format const * format = theFormats().getFormat(format_name);
                if (!format) {
                        lyxerr << "Format \"" << format_name
                                << "\" not recognized!"
@@ -2756,18 +2847,22 @@ void Buffer::dispatch(FuncRequest const & func, DispatchResult & dr)
        }
 
        case LFUN_BUFFER_VIEW_CACHE:
-               if (!formats.view(*this, d->preview_file_,
+               if (!theFormats().view(*this, d->preview_file_,
                                  d->preview_format_))
                        dr.setMessage(_("Error viewing the output file."));
                break;
 
        case LFUN_CHANGES_TRACK:
-               undo().recordUndoBufferParams(CursorData());
+               if (params().save_transient_properties)
+                       undo().recordUndoBufferParams(CursorData());
                params().track_changes = !params().track_changes;
+               if (!params().track_changes)
+                       dr.forceChangesUpdate();
                break;
 
        case LFUN_CHANGES_OUTPUT:
-               undo().recordUndoBufferParams(CursorData());
+               if (params().save_transient_properties)
+                       undo().recordUndoBufferParams(CursorData());
                params().output_changes = !params().output_changes;
                if (params().output_changes) {
                        bool dvipost    = LaTeXFeatures::isAvailable("dvipost");
@@ -2860,11 +2955,9 @@ void Buffer::getLanguages(std::set<Language const *> & languages) const
 DocIterator Buffer::getParFromID(int const id) const
 {
        Buffer * buf = const_cast<Buffer *>(this);
-       if (id < 0) {
-               // John says this is called with id == -1 from undo
-               lyxerr << "getParFromID(), id: " << id << endl;
+       if (id < 0)
+               // This means non-existent
                return doc_iterator_end(buf);
-       }
 
        for (DocIterator it = doc_iterator_begin(buf); !it.atEnd(); it.forwardPar())
                if (it.paragraph().id() == id)
@@ -2922,29 +3015,19 @@ bool Buffer::isClean() const
 }
 
 
-bool Buffer::isExternallyModified(CheckMethod method) const
+bool Buffer::isChecksumModified() const
 {
        LASSERT(d->filename.exists(), return false);
-       // if method == timestamp, check timestamp before checksum
-       return (method == checksum_method
-               || d->timestamp_ != d->filename.lastModified())
-               && d->checksum_ != d->filename.checksum();
+       return d->checksum_ != d->filename.checksum();
 }
 
 
 void Buffer::saveCheckSum() const
 {
        FileName const & file = d->filename;
-
        file.refresh();
-       if (file.exists()) {
-               d->timestamp_ = file.lastModified();
-               d->checksum_ = file.checksum();
-       } else {
-               // in the case of save to a new file.
-               d->timestamp_ = 0;
-               d->checksum_ = 0;
-       }
+       d->checksum_ = file.exists() ? file.checksum()
+               : 0; // in the case of save to a new file.
 }
 
 
@@ -2958,6 +3041,7 @@ void Buffer::markClean() const
        // autosave
        d->bak_clean = true;
        d->undo_.markDirty();
+       clearExternalModification();
 }
 
 
@@ -3029,15 +3113,132 @@ string Buffer::filePath() const
 }
 
 
-string Buffer::originFilePath() const
+DocFileName Buffer::getReferencedFileName(string const & fn) const
 {
-       if (FileName::isAbsolute(params().origin))
-               return params().origin;
+       DocFileName result;
+       if (FileName::isAbsolute(fn) || !FileName::isAbsolute(params().origin))
+               result.set(fn, filePath());
+       else {
+               // filePath() ends with a path separator
+               FileName const test(filePath() + fn);
+               if (test.exists())
+                       result.set(fn, filePath());
+               else
+                       result.set(fn, params().origin);
+       }
+
+       return result;
+}
+
+
+string const Buffer::prepareFileNameForLaTeX(string const & name,
+                                            string const & ext, bool nice) const
+{
+       string const fname = makeAbsPath(name, filePath()).absFileName();
+       if (FileName::isAbsolute(name) || !FileName(fname + ext).isReadableFile())
+               return name;
+       if (!nice)
+               return fname;
+
+       // FIXME UNICODE
+       return to_utf8(makeRelPath(from_utf8(fname),
+               from_utf8(masterBuffer()->filePath())));
+}
+
+
+vector<docstring> const Buffer::prepareBibFilePaths(OutputParams const & runparams,
+                                               FileNamePairList const bibfilelist,
+                                               bool const add_extension) const
+{
+       // If we are processing the LaTeX file in a temp directory then
+       // copy the .bib databases to this temp directory, mangling their
+       // names in the process. Store this mangled name in the list of
+       // all databases.
+       // (We need to do all this because BibTeX *really*, *really*
+       // can't handle "files with spaces" and Windows users tend to
+       // use such filenames.)
+       // Otherwise, store the (maybe absolute) path to the original,
+       // unmangled database name.
+
+       vector<docstring> res;
+
+       // determine the export format
+       string const tex_format = flavor2format(runparams.flavor);
 
-       return filePath();
+       // check for spaces in paths
+       bool found_space = false;
+
+       FileNamePairList::const_iterator it = bibfilelist.begin();
+       FileNamePairList::const_iterator en = bibfilelist.end();
+       for (; it != en; ++it) {
+               string utf8input = to_utf8(it->first);
+               string database =
+                       prepareFileNameForLaTeX(utf8input, ".bib", runparams.nice);
+               FileName const try_in_file =
+                       makeAbsPath(database + ".bib", filePath());
+               bool const not_from_texmf = try_in_file.isReadableFile();
+
+               if (!runparams.inComment && !runparams.dryrun && !runparams.nice &&
+                   not_from_texmf) {
+                       // mangledFileName() needs the extension
+                       DocFileName const in_file = DocFileName(try_in_file);
+                       database = removeExtension(in_file.mangledFileName());
+                       FileName const out_file = makeAbsPath(database + ".bib",
+                                       masterBuffer()->temppath());
+                       bool const success = in_file.copyTo(out_file);
+                       if (!success) {
+                               LYXERR0("Failed to copy '" << in_file
+                                      << "' to '" << out_file << "'");
+                       }
+               } else if (!runparams.inComment && runparams.nice && not_from_texmf) {
+                       runparams.exportdata->addExternalFile(tex_format, try_in_file, database + ".bib");
+                       if (!isValidLaTeXFileName(database)) {
+                               frontend::Alert::warning(_("Invalid filename"),
+                                        _("The following filename will cause troubles "
+                                              "when running the exported file through LaTeX: ") +
+                                            from_utf8(database));
+                       }
+                       if (!isValidDVIFileName(database)) {
+                               frontend::Alert::warning(_("Problematic filename for DVI"),
+                                        _("The following filename can cause troubles "
+                                              "when running the exported file through LaTeX "
+                                                  "and opening the resulting DVI: ") +
+                                            from_utf8(database), true);
+                       }
+               }
+
+               if (add_extension)
+                       database += ".bib";
+
+               // FIXME UNICODE
+               docstring const path = from_utf8(latex_path(database));
+
+               if (contains(path, ' '))
+                       found_space = true;
+
+               if (find(res.begin(), res.end(), path) == res.end())
+                       res.push_back(path);
+       }
+
+       // Check if there are spaces in the path and warn BibTeX users, if so.
+       // (biber can cope with such paths)
+       if (!prefixIs(runparams.bibtex_command, "biber")) {
+               // Post this warning only once.
+               static bool warned_about_spaces = false;
+               if (!warned_about_spaces &&
+                   runparams.nice && found_space) {
+                       warned_about_spaces = true;
+                       Alert::warning(_("Export Warning!"),
+                                      _("There are spaces in the paths to your BibTeX databases.\n"
+                                                     "BibTeX will be unable to find them."));
+               }
+       }
+
+       return res;
 }
 
 
+
 string Buffer::layoutPos() const
 {
        return d->layout_position;
@@ -3061,12 +3262,18 @@ void Buffer::setLayoutPos(string const & path)
 }
 
 
-bool Buffer::isReadonly() const
+bool Buffer::hasReadonlyFlag() const
 {
        return d->read_only;
 }
 
 
+bool Buffer::isReadonly() const
+{
+       return hasReadonlyFlag() || notifiesExternalModification();
+}
+
+
 void Buffer::setParent(Buffer const * buffer)
 {
        // Avoids recursive include.
@@ -3394,7 +3601,7 @@ void Buffer::Impl::updateMacros(DocIterator & it, DocIterator & scope)
                                continue;
 
                        // get macro data
-                       MathMacroTemplate & macroTemplate =
+                       InsetMathMacroTemplate & macroTemplate =
                                *iit->inset->asInsetMath()->asMacroTemplate();
                        MacroContext mc(owner_, it);
                        macroTemplate.updateToContext(mc);
@@ -3491,7 +3698,7 @@ void Buffer::updateMacroInstances(UpdateType utype) const
                MacroContext mc = MacroContext(this, it);
                for (DocIterator::idx_type i = 0; i < n; ++i) {
                        MathData & data = minset->cell(i);
-                       data.updateMacros(0, mc, utype);
+                       data.updateMacros(0, mc, utype, 0);
                }
        }
 }
@@ -3513,8 +3720,12 @@ void Buffer::listMacroNames(MacroNameSet & macros) const
        // loop over children
        Impl::BufferPositionMap::iterator it = d->children_positions.begin();
        Impl::BufferPositionMap::iterator end = d->children_positions.end();
-       for (; it != end; ++it)
-               it->first->listMacroNames(macros);
+       for (; it != end; ++it) {
+               Buffer * child = const_cast<Buffer *>(it->first);
+               // The buffer might have been closed (see #10766).
+               if (theBufferList().isLoaded(child))
+                       child->listMacroNames(macros);
+       }
 
        // call parent
        Buffer const * const pbuf = d->parent();
@@ -3544,7 +3755,7 @@ void Buffer::listParentMacros(MacroSet & macros, LaTeXFeatures & features) const
                if (data) {
                        macros.insert(data);
 
-                       // we cannot access the original MathMacroTemplate anymore
+                       // we cannot access the original InsetMathMacroTemplate anymore
                        // here to calls validate method. So we do its work here manually.
                        // FIXME: somehow make the template accessible here.
                        if (data->optionals() > 0)
@@ -3633,11 +3844,11 @@ void Buffer::changeRefsIfUnique(docstring const & from, docstring const & to)
 }
 
 // returns NULL if id-to-row conversion is unsupported
-auto_ptr<TexRow> Buffer::getSourceCode(odocstream & os, string const & format,
-                          pit_type par_begin, pit_type par_end,
-                          OutputWhat output, bool master) const
+unique_ptr<TexRow> Buffer::getSourceCode(odocstream & os, string const & format,
+                                         pit_type par_begin, pit_type par_end,
+                                         OutputWhat output, bool master) const
 {
-       auto_ptr<TexRow> texrow(NULL);
+       unique_ptr<TexRow> texrow;
        OutputParams runparams(&params().encoding());
        runparams.nice = true;
        runparams.flavor = params().getOutputFlavor(format);
@@ -3689,17 +3900,15 @@ auto_ptr<TexRow> Buffer::getSourceCode(odocstream & os, string const & format,
                        // in order to know if we should output polyglossia
                        // macros (instead of babel macros)
                        LaTeXFeatures features(*this, params(), runparams);
-                       params().validate(features);
+                       validate(features);
                        runparams.use_polyglossia = features.usePolyglossia();
-                       texrow.reset(new TexRow());
-                       texrow->newline();
-                       texrow->newline();
                        // latex or literate
-                       otexstream ots(os, *texrow);
-
+                       otexstream ots(os);
+                       // output above
+                       ots.texrow().newlines(2);
                        // the real stuff
                        latexParagraphs(*this, text(), ots, runparams);
-                       texrow->finalize();
+                       texrow = ots.releaseTexRow();
 
                        // Restore the parenthood
                        if (!master)
@@ -3734,14 +3943,14 @@ auto_ptr<TexRow> Buffer::getSourceCode(odocstream & os, string const & format,
                                writeDocBookSource(os, absFileName(), runparams, output);
                } else {
                        // latex or literate
-                       texrow.reset(new TexRow());
-                       texrow->newline();
-                       texrow->newline();
-                       otexstream ots(os, *texrow);
+                       otexstream ots(os);
+                       // output above
+                       ots.texrow().newlines(2);
                        if (master)
                                runparams.is_child = true;
+                       updateBuffer();
                        writeLaTeXSource(ots, string(), runparams, output);
-                       texrow->finalize();
+                       texrow = ots.releaseTexRow();
                }
        }
        return texrow;
@@ -3827,7 +4036,7 @@ public:
        ///
        virtual shared_ptr<ForkedProcess> clone() const
        {
-               return shared_ptr<ForkedProcess>(new AutoSaveBuffer(*this));
+               return make_shared<AutoSaveBuffer>(*this);
        }
        ///
        int start()
@@ -3898,7 +4107,7 @@ int AutoSaveBuffer::generateChild()
        return pid;
 }
 
-} // namespace anon
+} // namespace
 
 
 FileName Buffer::getEmergencyFileName() const
@@ -3946,7 +4155,7 @@ void Buffer::moveAutosaveFile(support::FileName const & oldauto) const
 bool Buffer::autoSave() const
 {
        Buffer const * buf = d->cloned_buffer_ ? d->cloned_buffer_ : this;
-       if (buf->d->bak_clean || isReadonly())
+       if (buf->d->bak_clean || hasReadonlyFlag())
                return true;
 
        message(_("Autosaving current document..."));
@@ -4044,6 +4253,8 @@ Buffer::ExportStatus Buffer::doExport(string const & target, bool put_in_tempdir
        if (pos != string::npos) {
                dest_filename = target.substr(pos + 1, target.length() - pos - 1);
                format = target.substr(0, pos);
+               if (format == "default")
+                       format = params().getDefaultOutputFormat();
                runparams.export_folder = FileName(dest_filename).onlyPath().realPath();
                FileName(dest_filename).onlyPath().createPath();
                LYXERR(Debug::FILES, "format=" << format << ", dest_filename=" << dest_filename << ", export_folder=" << runparams.export_folder);
@@ -4074,7 +4285,7 @@ Buffer::ExportStatus Buffer::doExport(string const & target, bool put_in_tempdir
                                // file (not for previewing).
                                Alert::error(_("Couldn't export file"), bformat(
                                        _("No information for exporting the format %1$s."),
-                                       formats.prettyName(format)));
+                                       theFormats().prettyName(format)));
                        }
                        return ExportNoPathToFormat;
                }
@@ -4104,7 +4315,7 @@ Buffer::ExportStatus Buffer::doExport(string const & target, bool put_in_tempdir
        string filename = latexName(false);
        filename = addName(temppath(), filename);
        filename = changeExtension(filename,
-                                  formats.extension(backend_format));
+                                  theFormats().extension(backend_format));
        LYXERR(Debug::FILES, "filename=" << filename);
 
        // Plain text backend
@@ -4150,7 +4361,7 @@ Buffer::ExportStatus Buffer::doExport(string const & target, bool put_in_tempdir
        string const error_type = (format == "program")
                ? "Build" : params().bufferFormat();
        ErrorList & error_list = d->errorLists[error_type];
-       string const ext = formats.extension(format);
+       string const ext = theFormats().extension(format);
        FileName const tmp_result_file(changeExtension(filename, ext));
        bool const success = converters.convert(this, FileName(filename),
                tmp_result_file, FileName(absFileName()), backend_format, format,
@@ -4218,7 +4429,7 @@ Buffer::ExportStatus Buffer::doExport(string const & target, bool put_in_tempdir
        vector<ExportedFile>::const_iterator it = files.begin();
        vector<ExportedFile>::const_iterator const en = files.end();
        for (; it != en && status != CANCEL; ++it) {
-               string const fmt = formats.getFormatFromFile(it->sourceName);
+               string const fmt = theFormats().getFormatFromFile(it->sourceName);
                string fixedName = it->exportName;
                if (!runparams.export_folder.empty()) {
                        // Relative pathnames starting with ../ will be sanitized
@@ -4254,13 +4465,13 @@ Buffer::ExportStatus Buffer::doExport(string const & target, bool put_in_tempdir
                } else {
                        message(bformat(_("Document exported as %1$s "
                                "to file `%2$s'"),
-                               formats.prettyName(format),
+                               theFormats().prettyName(format),
                                makeDisplayPath(result_file)));
                }
        } else {
                // This must be a dummy converter like fax (bug 1888)
                message(bformat(_("Document exported as %1$s"),
-                       formats.prettyName(format)));
+                       theFormats().prettyName(format)));
        }
 
        return success ? ExportSuccess : ExportConverterError;
@@ -4290,26 +4501,22 @@ Buffer::ExportStatus Buffer::preview(string const & format, bool includeall) con
        ExportStatus const status = doExport(format, true, false, result_file);
        FileName const previewFile(result_file);
 
-       LATTEST (isClone());
-       d->cloned_buffer_->d->preview_file_ = previewFile;
-       d->cloned_buffer_->d->preview_format_ = format;
-       d->cloned_buffer_->d->preview_error_ = (status != ExportSuccess);
+       Impl * theimpl = isClone() ? d->cloned_buffer_->d : d;
+       theimpl->preview_file_ = previewFile;
+       theimpl->preview_format_ = format;
+       theimpl->preview_error_ = (status != ExportSuccess);
 
        if (status != ExportSuccess)
                return status;
-       if (previewFile.exists()) {
-               if (!formats.view(*this, previewFile, format))
-                       return PreviewError;
-               else
-                       return PreviewSuccess;
-       }
-       else {
-               // Successful export but no output file?
-               // Probably a bug in error detection.
-               LATTEST (status != ExportSuccess);
 
-               return status;
-       }
+       if (previewFile.exists())
+               return theFormats().view(*this, previewFile, format) ?
+                       PreviewSuccess : PreviewError;
+
+       // Successful export but no output file?
+       // Probably a bug in error detection.
+       LATTEST(status != ExportSuccess);
+       return status;
 }
 
 
@@ -4345,7 +4552,7 @@ Buffer::ReadStatus Buffer::loadEmergency()
                ReadStatus const ret_llf = loadThisLyXFile(emergencyFile);
                bool const success = (ret_llf == ReadSuccess);
                if (success) {
-                       if (isReadonly()) {
+                       if (hasReadonlyFlag()) {
                                Alert::warning(_("File is read-only"),
                                        bformat(_("An emergency file is successfully loaded, "
                                        "but the original file %1$s is marked read-only. "
@@ -4408,7 +4615,7 @@ Buffer::ReadStatus Buffer::loadAutosave()
                ReadStatus const ret_llf = loadThisLyXFile(autosaveFile);
                // the file is not saved if we load the autosave file.
                if (ret_llf == ReadSuccess) {
-                       if (isReadonly()) {
+                       if (hasReadonlyFlag()) {
                                Alert::warning(_("File is read-only"),
                                        bformat(_("A backup file is successfully loaded, "
                                        "but the original file %1$s is marked read-only. "
@@ -4461,56 +4668,33 @@ Buffer::ReadStatus Buffer::loadThisLyXFile(FileName const & fn)
 
 void Buffer::bufferErrors(TeXErrors const & terr, ErrorList & errorList) const
 {
-       TeXErrors::Errors::const_iterator it = terr.begin();
-       TeXErrors::Errors::const_iterator end = terr.end();
-       ListOfBuffers clist = getDescendents();
-       ListOfBuffers::const_iterator cen = clist.end();
-
-       for (; it != end; ++it) {
-               int id_start = -1;
-               int pos_start = -1;
-               int errorRow = it->error_in_line;
+       for (auto const & err : terr) {
+               TexRow::TextEntry start = TexRow::text_none, end = TexRow::text_none;
+               int errorRow = err.error_in_line;
                Buffer const * buf = 0;
                Impl const * p = d;
-               if (it->child_name.empty())
-                   p->texrow.getIdFromRow(errorRow, id_start, pos_start);
+               if (err.child_name.empty())
+                       tie(start, end) = p->texrow.getEntriesFromRow(errorRow);
                else {
                        // The error occurred in a child
-                       ListOfBuffers::const_iterator cit = clist.begin();
-                       for (; cit != cen; ++cit) {
+                       for (Buffer const * child : getDescendents()) {
                                string const child_name =
-                                       DocFileName(changeExtension(
-                                               (*cit)->absFileName(), "tex")).
-                                                       mangledFileName();
-                               if (it->child_name != child_name)
+                                       DocFileName(changeExtension(child->absFileName(), "tex")).
+                                       mangledFileName();
+                               if (err.child_name != child_name)
                                        continue;
-                               (*cit)->d->texrow.getIdFromRow(errorRow,
-                                                       id_start, pos_start);
-                               if (id_start != -1) {
+                               tie(start, end) = child->d->texrow.getEntriesFromRow(errorRow);
+                               if (!TexRow::isNone(start)) {
                                        buf = d->cloned_buffer_
-                                               ? (*cit)->d->cloned_buffer_->d->owner_
-                                               : (*cit)->d->owner_;
-                                       p = (*cit)->d;
+                                               ? child->d->cloned_buffer_->d->owner_
+                                               : child->d->owner_;
+                                       p = child->d;
                                        break;
                                }
                        }
                }
-               int id_end = -1;
-               int pos_end = -1;
-               bool found;
-               do {
-                       ++errorRow;
-                       found = p->texrow.getIdFromRow(errorRow, id_end, pos_end);
-               } while (found && id_start == id_end && pos_start == pos_end);
-
-               if (id_start != id_end) {
-                       // Next registered position is outside the inset where
-                       // the error occurred, so signal end-of-paragraph
-                       pos_end = 0;
-               }
-
-               errorList.push_back(ErrorItem(it->error_desc,
-                       it->error_text, id_start, pos_start, pos_end, buf));
+               errorList.push_back(ErrorItem(err.error_desc, err.error_text,
+                                             start, end, buf));
        }
 }
 
@@ -4570,6 +4754,7 @@ void Buffer::updateBuffer(UpdateScope scope, UpdateType utype) const
        // update all caches
        clearReferenceCache();
        updateMacros();
+       setChangesPresent(false);
 
        Buffer & cbuf = const_cast<Buffer &>(*this);
 
@@ -4578,7 +4763,10 @@ void Buffer::updateBuffer(UpdateScope scope, UpdateType utype) const
        updateBuffer(parit, utype);
 
        if (master != this)
-               // TocBackend update will be done later.
+               // If this document has siblings, then update the TocBackend later. The
+               // reason is to ensure that later siblings are up to date when e.g. the
+               // broken or not status of references is computed. The update is called
+               // in InsetInclude::addToToc.
                return;
 
        d->bibinfo_cache_valid_ = true;
@@ -4597,6 +4785,11 @@ static depth_type getDepth(DocIterator const & it)
                if (!it[i].inset().inMathed())
                        depth += it[i].paragraph().getDepth() + 1;
        // remove 1 since the outer inset does not count
+       // we should have at least one non-math inset, so
+       // depth should nevery be 0. but maybe it is worth
+       // marking this, just in case.
+       LATTEST(depth > 0);
+       // coverity[INTEGER_OVERFLOW]
        return depth - 1;
 }
 
@@ -4652,7 +4845,7 @@ static bool needEnumCounterReset(ParIterator const & it)
                --prev_it.top().pit();
                Paragraph const & prev_par = *prev_it;
                if (prev_par.getDepth() <= cur_depth)
-                       return  prev_par.layout().labeltype != LABEL_ENUMERATE;
+                       return prev_par.layout().name() != par.layout().name();
        }
        // start of nested inset: reset
        return true;
@@ -4723,8 +4916,10 @@ void Buffer::Impl::setLabel(ParIterator & it, UpdateType utype) const
                switch (par.itemdepth) {
                case 2:
                        enumcounter += 'i';
+                       // fall through
                case 1:
                        enumcounter += 'i';
+                       // fall through
                case 0:
                        enumcounter += 'i';
                        break;
@@ -4736,8 +4931,12 @@ void Buffer::Impl::setLabel(ParIterator & it, UpdateType utype) const
                        break;
                }
 
+               // Increase the master counter?
+               if (layout.stepmastercounter && needEnumCounterReset(it))
+                       counters.stepMaster(enumcounter, utype);
+
                // Maybe we have to reset the enumeration counter.
-               if (needEnumCounterReset(it))
+               if (!layout.resumecounter && needEnumCounterReset(it))
                        counters.reset(enumcounter);
                counters.step(enumcounter, utype);
 
@@ -4833,6 +5032,9 @@ void Buffer::updateBuffer(ParIterator & parit, UpdateType utype) const
                // set the counter for this paragraph
                d->setLabel(parit, utype);
 
+               // update change-tracking flag
+               parit->addChangesToBuffer(*this);
+
                // now the insets
                InsetList::const_iterator iit = parit->insetList().begin();
                InsetList::const_iterator end = parit->insetList().end();
@@ -5071,13 +5273,23 @@ void Buffer::checkMasterBuffer()
 
 string Buffer::includedFilePath(string const & name, string const & ext) const
 {
+       if (d->old_position.empty() ||
+           equivalent(FileName(d->old_position), FileName(filePath())))
+               return name;
+
        bool isabsolute = FileName::isAbsolute(name);
-       // old_position already contains a trailing path separator
-       string const absname = isabsolute ? name : d->old_position + name;
+       // both old_position and filePath() end with a path separator
+       string absname = isabsolute ? name : d->old_position + name;
+
+       // if old_position is set to origin, we need to do the equivalent of
+       // getReferencedFileName() (see readDocument())
+       if (!isabsolute && d->old_position == params().origin) {
+               FileName const test(addExtension(filePath() + name, ext));
+               if (test.exists())
+                       absname = filePath() + name;
+       }
 
-       if (d->old_position.empty()
-           || equivalent(FileName(d->old_position), FileName(filePath()))
-           || !FileName(addExtension(absname, ext)).exists())
+       if (!FileName(addExtension(absname, ext)).exists())
                return name;
 
        if (isabsolute)
@@ -5087,4 +5299,84 @@ string Buffer::includedFilePath(string const & name, string const & ext) const
                                   from_utf8(filePath())));
 }
 
+
+void Buffer::setChangesPresent(bool b) const
+{
+       d->tracked_changes_present_ = b;
+}
+
+
+bool Buffer::areChangesPresent() const
+{
+       return d->tracked_changes_present_;
+}
+
+
+void Buffer::updateChangesPresent() const
+{
+       LYXERR(Debug::CHANGES, "Buffer::updateChangesPresent");
+       setChangesPresent(false);
+       ParConstIterator it = par_iterator_begin();
+       ParConstIterator const end = par_iterator_end();
+       for (; !areChangesPresent() && it != end; ++it)
+               it->addChangesToBuffer(*this);
+}
+
+
+void Buffer::Impl::refreshFileMonitor()
+{
+       if (file_monitor_ && file_monitor_->filename() == filename.absFileName()) {
+               file_monitor_->refresh();
+               return;
+       }
+
+       // The previous file monitor is invalid
+       // This also destroys the previous file monitor and all its connections
+       file_monitor_ = FileSystemWatcher::monitor(filename);
+       // file_monitor_ will be destroyed with *this, so it is not going to call a
+       // destroyed object method.
+       file_monitor_->connect([this](bool exists) {
+                       fileExternallyModified(exists);
+               });
+}
+
+
+void Buffer::Impl::fileExternallyModified(bool const exists)
+{
+       // ignore notifications after our own saving operations
+       if (checksum_ == filename.checksum()) {
+               LYXERR(Debug::FILES, "External modification but "
+                      "checksum unchanged: " << filename);
+               return;
+       }
+       lyx_clean = bak_clean = false;
+       // If the file has been deleted, only mark the file as dirty since it is
+       // pointless to prompt for reloading. If later a file is moved into this
+       // location, then the externally modified warning will appear then.
+       if (exists)
+                       externally_modified_ = true;
+       // Update external modification notification.
+       // Dirty buffers must be visible at all times.
+       if (wa_ && wa_->unhide(owner_))
+               wa_->updateTitles();
+       else
+               // Unable to unhide the buffer (e.g. no GUI or not current View)
+               lyx_clean = true;
+}
+
+
+bool Buffer::notifiesExternalModification() const
+{
+       return d->externally_modified_;
+}
+
+
+void Buffer::clearExternalModification() const
+{
+       d->externally_modified_ = false;
+       if (d->wa_)
+               d->wa_->updateTitles();
+}
+
+
 } // namespace lyx