+# file lyxsweave.R
+# This file is part of LyX, the document processor.
+# Licence details can be found in the file COPYING.
+
+# author Jean-Marc Lasgouttes
+
+# Full author contact details are available in file CREDITS
+
# Wrapper around Sweave that sets up some things for LyX
-# argument 1 is the file name
+# argument 1 is the absolute name of the input file
+# argument 2 is the absolute name of the output file
+# argument 3 is the iconv name for the encoding of the file
+# argument 4 is the original document directory
+
+ls.args <- commandArgs(trailingOnly=TRUE)
+
+# check whether Sweave.sty is seen by LaTeX. if it is not, we will
+# pass the option stylepath=TRUE to sweave so that a full path is given
+# to \usepackage.
+ls.sweavesty <- system("kpsewhich Sweave.sty", intern=TRUE, ignore.stderr=TRUE)
+ls.sp <- (length(ls.sweavesty) == 0)
+
+# set default encoding for input and output files; ls.enc is used in
+# the sweave module preamble to reset the encoding to what it was.
+ls.enc <- getOption("encoding")
+options(encoding=ls.args[3])
+
+# Change current directory to the document directory, so that R can find
+# data files.
+setwd(ls.args[4])
-args <- commandArgs(trailingOnly=T)
+# this is passed as a prefix.string to tell where temporary files should go
+ls.pr <- gsub('\\.([^/]*)$', '-\\1', sub("\\.tex$", "", ls.args[2]))
-# check whether Sweave.sty is seen by LaTeX
-sweavesty <- system("kpsewhich Sweave.sty", intern=T, ignore.stderr=T)
-sp <- (length(sweavesty) == 0)
-Sweave(args[1], stylepath=sp)
+# finally run sweave
+Sweave(file=ls.args[1], output=ls.args[2], syntax="SweaveSyntaxNoweb", stylepath=ls.sp, prefix.string=ls.pr)