addendum to previous commit

[lyx.git] / lib / templates / JSS-article.lyx

diff --git a/lib/templates/JSS-article.lyx b/lib/templates/JSS-article.lyx
index 2978ff2f57286b3def720bf81ca6733a2ddd30c0..6a9acc36d7492cf8290f8bf930ae3679ba25e77a 100644 (file)
--- a/lib/templates/JSS-article.lyx
+++ b/lib/templates/JSS-article.lyx
@@ -1,5 +1,5 @@
-#LyX 1.5.5 created this file. For more info see http://www.lyx.org/
-\lyxformat 276
+#LyX 2.0 created this file. For more info see http://www.lyx.org/
+\lyxformat 413

 \begin_document
 \begin_header
 \textclass jss
 \begin_document
 \begin_header
 \textclass jss


@@ -76,38 +76,59 @@
 %% need no \usepackage{Sweave.sty}
 \end_preamble
 \options article
 %% need no \usepackage{Sweave.sty}
 \end_preamble
 \options article

+\use_default_options false
+\maintain_unincluded_children false

 \language english
 \language english

+\language_package default

 \inputencoding auto
 \inputencoding auto

+\fontencoding global

 \font_roman default
 \font_sans default
 \font_typewriter default
 \font_default_family default
 \font_roman default
 \font_sans default
 \font_typewriter default
 \font_default_family default

+\use_non_tex_fonts false

 \font_sc false
 \font_osf false
 \font_sf_scale 100
 \font_tt_scale 100
 \font_sc false
 \font_osf false
 \font_sf_scale 100
 \font_tt_scale 100

+

 \graphics default
 \graphics default

+\default_output_format default
+\output_sync 0
+\bibtex_command default
+\index_command default

 \paperfontsize default
 \spacing single
 \paperfontsize default
 \spacing single

+\use_hyperref false

 \papersize default
 \use_geometry false
 \use_amsmath 0
 \use_esint 0
 \papersize default
 \use_geometry false
 \use_amsmath 0
 \use_esint 0

+\use_mhchem 1
+\use_mathdots 1

 \cite_engine natbib_authoryear
 \use_bibtopic false
 \cite_engine natbib_authoryear
 \use_bibtopic false

+\use_indices false

 \paperorientation portrait
 \paperorientation portrait

+\suppress_date false
+\use_refstyle 0
+\index Index
+\shortcut idx
+\color #008000
+\end_index

 \secnumdepth 3
 \tocdepth 3
 \paragraph_separation indent
 \secnumdepth 3
 \tocdepth 3
 \paragraph_separation indent

-\defskip medskip
+\paragraph_indentation default

 \quotes_language english
 \papercolumns 1
 \papersides 1
 \paperpagestyle default
 \tracking_changes false
 \output_changes false
 \quotes_language english
 \papercolumns 1
 \papersides 1
 \paperpagestyle default
 \tracking_changes false
 \output_changes false

-\author "" 
-\author "" 
+\html_math_output 0
+\html_css_as_file 0
+\html_be_strict false

 \end_header
 
 \begin_body
 \end_header
 
 \begin_body


@@ -116,16 +137,31 @@
 \begin_inset Note Note
 status open
 
 \begin_inset Note Note
 status open
 

-\begin_layout Standard
-This is a template LyX file for an article written using the Journal of
- Statistical Software (JSS) LaTeX style file, which can be downloaded from
- http://www.jstatsoft.org/downloads/JSSstyle.zip.
- These files have to be installed before this template can be used.
- Consult chapter 5.1 in the LyX Customization manual.
- See also the documentation included with the JSS LaTeX style file.
+\begin_layout Plain Layout
+This is a template LyX file for articles to be submitted to the Journal
+ of Statistical Software (JSS).
+ How to install the JSS LaTeX class to your LaTeX system is explained in
+ 
+\begin_inset Flex URL
+status open
+
+\begin_layout Plain Layout
+
+http://wiki.lyx.org/Layouts/JSS

 \end_layout
 
 \end_layout
 

-\begin_layout Standard
+\end_inset
+
+.
+\end_layout
+
+\end_inset
+
+
+\begin_inset Note Note
+status open
+
+\begin_layout Plain Layout

 Note that title, author, address, abstract, keywords etc for this article
  style are written in the LaTeX preamble (accessed from Document\SpecialChar \menuseparator
 Settings...\SpecialChar \menuseparator
 Note that title, author, address, abstract, keywords etc for this article
  style are written in the LaTeX preamble (accessed from Document\SpecialChar \menuseparator
 Settings...\SpecialChar \menuseparator


@@ -134,7 +170,7 @@ LaTeX
  
 \end_layout
 
  
 \end_layout
 

-\begin_layout Standard
+\begin_layout Plain Layout

 To use the JSS codesnippet, bookreview or softwarereview styles, replace
  the option 
 \begin_inset Quotes eld
 To use the JSS codesnippet, bookreview or softwarereview styles, replace
  the option 
 \begin_inset Quotes eld


@@ -175,7 +211,7 @@ softwarereview
  
 \end_layout
 
  
 \end_layout
 

-\begin_layout Standard
+\begin_layout Plain Layout

 If you want to use this JSS article style for a non-JSS article, replace
  the option 
 \begin_inset Quotes eld
 If you want to use this JSS article style for a non-JSS article, replace
  the option 
 \begin_inset Quotes eld


@@ -197,7 +233,7 @@ nojss
  This will suppress the JSS-specic parts of the layout.
 \end_layout
 
  This will suppress the JSS-specic parts of the layout.
 \end_layout
 

-\begin_layout Standard
+\begin_layout Plain Layout

 To include the JSS-specific parts of the layout, the article has to be processed
  with PDF, i.e.
  you cannot process it with DVI or PS.
 To include the JSS-specific parts of the layout, the article has to be processed
  with PDF, i.e.
  you cannot process it with DVI or PS.


@@ -221,17 +257,17 @@ nojss
 \begin_inset Note Note
 status collapsed
 
 \begin_inset Note Note
 status collapsed
 

-\begin_layout Standard
+\begin_layout Plain Layout

 The opt field provides bookmarks for PDF files
 \end_layout
 
 \end_inset
 
 
 The opt field provides bookmarks for PDF files
 \end_layout
 
 \end_inset
 
 

-\begin_inset OptArg
+\begin_inset Argument

 status collapsed
 
 status collapsed
 

-\begin_layout Standard
+\begin_layout Plain Layout

 About package foo in R
 \end_layout
 
 About package foo in R
 \end_layout
 


@@ -241,7 +277,7 @@ About package
 \begin_inset ERT
 status collapsed
 
 \begin_inset ERT
 status collapsed
 

-\begin_layout Standard
+\begin_layout Plain Layout

 
 
 \backslash
 
 
 \backslash


@@ -254,7 +290,7 @@ pkg
 \begin_inset ERT
 status collapsed
 
 \begin_inset ERT
 status collapsed
 

-\begin_layout Standard
+\begin_layout Plain Layout

 
 {
 \end_layout
 
 {
 \end_layout


@@ -265,7 +301,7 @@ foo
 \begin_inset ERT
 status collapsed
 
 \begin_inset ERT
 status collapsed
 

-\begin_layout Standard
+\begin_layout Plain Layout

 
 }
 \end_layout
 
 }
 \end_layout


@@ -276,7 +312,7 @@ status collapsed
 \begin_inset ERT
 status collapsed
 
 \begin_inset ERT
 status collapsed
 

-\begin_layout Standard
+\begin_layout Plain Layout

 
 
 \backslash
 
 
 \backslash


@@ -289,7 +325,7 @@ proglang
 \begin_inset ERT
 status collapsed
 
 \begin_inset ERT
 status collapsed
 

-\begin_layout Standard
+\begin_layout Plain Layout

 
 {
 \end_layout
 
 {
 \end_layout


@@ -300,7 +336,7 @@ R
 \begin_inset ERT
 status collapsed
 
 \begin_inset ERT
 status collapsed
 

-\begin_layout Standard
+\begin_layout Plain Layout

 
 }
 \end_layout
 
 }
 \end_layout


@@ -316,7 +352,7 @@ The special JSS style commands related to software and mathematical formulas
 \begin_inset ERT
 status open
 
 \begin_inset ERT
 status open
 

-\begin_layout Standard
+\begin_layout Plain Layout

 
 
 \backslash
 
 
 \backslash


@@ -329,7 +365,7 @@ proglang{R}
 \begin_inset ERT
 status collapsed
 
 \begin_inset ERT
 status collapsed
 

-\begin_layout Standard
+\begin_layout Plain Layout

 
 
 \backslash
 
 
 \backslash


@@ -342,7 +378,7 @@ R
 \begin_inset ERT
 status collapsed
 
 \begin_inset ERT
 status collapsed
 

-\begin_layout Standard
+\begin_layout Plain Layout

 
 }
 \end_layout
 
 }
 \end_layout


@@ -353,7 +389,7 @@ status collapsed
 \begin_inset ERT
 status open
 
 \begin_inset ERT
 status open
 

-\begin_layout Standard
+\begin_layout Plain Layout

 
 
 \backslash
 
 
 \backslash


@@ -366,7 +402,7 @@ pkg{foo}
 \begin_inset ERT
 status collapsed
 
 \begin_inset ERT
 status collapsed
 

-\begin_layout Standard
+\begin_layout Plain Layout

 
 
 \backslash
 
 
 \backslash


@@ -379,7 +415,7 @@ foo
 \begin_inset ERT
 status collapsed
 
 \begin_inset ERT
 status collapsed
 

-\begin_layout Standard
+\begin_layout Plain Layout

 
 }
 \end_layout
 
 }
 \end_layout


@@ -390,7 +426,7 @@ status collapsed
 \begin_inset ERT
 status open
 
 \begin_inset ERT
 status open
 

-\begin_layout Standard
+\begin_layout Plain Layout

 
 
 \backslash
 
 
 \backslash


@@ -403,7 +439,7 @@ code{some code}
 \begin_inset ERT
 status collapsed
 
 \begin_inset ERT
 status collapsed
 

-\begin_layout Standard
+\begin_layout Plain Layout

 
 
 \backslash
 
 
 \backslash


@@ -416,7 +452,7 @@ some code
 \begin_inset ERT
 status collapsed
 
 \begin_inset ERT
 status collapsed
 

-\begin_layout Standard
+\begin_layout Plain Layout

 
 }
 \end_layout
 
 }
 \end_layout


@@ -431,7 +467,7 @@ status collapsed
 \begin_inset Note Note
 status open
 
 \begin_inset Note Note
 status open
 

-\begin_layout Standard
+\begin_layout Plain Layout

 written as 
 \backslash
 E
 written as 
 \backslash
 E


@@ -447,7 +483,7 @@ E
 \begin_inset Note Note
 status open
 
 \begin_inset Note Note
 status open
 

-\begin_layout Standard
+\begin_layout Plain Layout

 written as 
 \backslash
 VAR
 written as 
 \backslash
 VAR


@@ -463,7 +499,7 @@ VAR
 \begin_inset Note Note
 status open
 
 \begin_inset Note Note
 status open
 

-\begin_layout Standard
+\begin_layout Plain Layout

 written as 
 \backslash
 COV
 written as 
 \backslash
 COV


@@ -479,7 +515,7 @@ COV
 \begin_inset Note Note
 status open
 
 \begin_inset Note Note
 status open
 

-\begin_layout Standard
+\begin_layout Plain Layout

 written as 
 \backslash
 Prob
 written as 
 \backslash
 Prob


@@ -498,43 +534,43 @@ Writing several lines of code:
 \begin_inset ERT
 status open
 
 \begin_inset ERT
 status open
 

-\begin_layout Standard
+\begin_layout Plain Layout

 
 
 \backslash
 begin{CodeChunk}
 \end_layout
 
 
 
 \backslash
 begin{CodeChunk}
 \end_layout
 

-\begin_layout Standard
+\begin_layout Plain Layout

 
 
 \backslash
 begin{Code}
 \end_layout
 
 
 
 \backslash
 begin{Code}
 \end_layout
 

-\begin_layout Standard
+\begin_layout Plain Layout

 
 first line of code
 \end_layout
 
 
 first line of code
 \end_layout
 

-\begin_layout Standard
+\begin_layout Plain Layout

 
 second line of code
 \end_layout
 
 
 second line of code
 \end_layout
 

-\begin_layout Standard
+\begin_layout Plain Layout

 
 third line of code
 \end_layout
 
 
 third line of code
 \end_layout
 

-\begin_layout Standard
+\begin_layout Plain Layout

 
 
 \backslash
 end{Code}
 \end_layout
 
 
 
 \backslash
 end{Code}
 \end_layout
 

-\begin_layout Standard
+\begin_layout Plain Layout

 
 
 \backslash
 
 
 \backslash


@@ -554,67 +590,67 @@ Alternatively, you can distinguish between input and output code:
 \begin_inset ERT
 status open
 
 \begin_inset ERT
 status open
 

-\begin_layout Standard
+\begin_layout Plain Layout

 
 
 \backslash
 begin{CodeChunk}
 \end_layout
 
 
 
 \backslash
 begin{CodeChunk}
 \end_layout
 

-\begin_layout Standard
+\begin_layout Plain Layout

 
 
 \backslash
 begin{CodeInput}
 \end_layout
 
 
 
 \backslash
 begin{CodeInput}
 \end_layout
 

-\begin_layout Standard
+\begin_layout Plain Layout

 
 first line of input code
 \end_layout
 
 
 first line of input code
 \end_layout
 

-\begin_layout Standard
+\begin_layout Plain Layout

 
 second line of input code
 \end_layout
 
 
 second line of input code
 \end_layout
 

-\begin_layout Standard
+\begin_layout Plain Layout

 
 
 \backslash
 end{CodeInput}
 \end_layout
 
 
 
 \backslash
 end{CodeInput}
 \end_layout
 

-\begin_layout Standard
+\begin_layout Plain Layout

 
 
 \backslash
 begin{CodeOutput}
 \end_layout
 
 
 
 \backslash
 begin{CodeOutput}
 \end_layout
 

-\begin_layout Standard
+\begin_layout Plain Layout

 
 first line of output code
 \end_layout
 
 
 first line of output code
 \end_layout
 

-\begin_layout Standard
+\begin_layout Plain Layout

 
 second line of output code
 \end_layout
 
 
 second line of output code
 \end_layout
 

-\begin_layout Standard
+\begin_layout Plain Layout

 
 third line of output code
 \end_layout
 
 
 third line of output code
 \end_layout
 

-\begin_layout Standard
+\begin_layout Plain Layout

 
 
 \backslash
 end{CodeOutput}
 \end_layout
 
 
 
 \backslash
 end{CodeOutput}
 \end_layout
 

-\begin_layout Standard
+\begin_layout Plain Layout

 
 
 \backslash
 
 
 \backslash